Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
KIRP rs3821539 chr3:124516231 G/A 0.000169 287 26 26.58 16.47 KM Plot
KIRP rs3836310 chr3:124495717 CTTTT/C 3.86E-5 286 26.1 25.65 16.47 KM Plot
KIRP rs3836311 chr3:124495851 G/GC 3.86E-5 286 26.1 25.65 16.47 KM Plot
KIRP rs3836315 chr3:124554043 T/TC 0.000108 286 25.93 26 16.47 KM Plot
KIRP rs385834 chr12:45304754 T/C 0.000101 285 20.27 28.12 24.48 KM Plot
KIRP rs385946 chr12:45325089 C/A 0.000104 286 20.27 28.12 24.3 KM Plot
KIRP rs3867128 chr11:65653632 C/T 4.5E-7 279 25.15 35.6 10.7 KM Plot
KIRP rs3887068 chr1:89509723 G/A 7.57E-5 284 18.9 34.48 26.57 KM Plot
KIRP rs3889927 chr18:44339927 A/G 9.34E-6 289 24.8 26.77 24.55 KM Plot
KIRP rs3890773 chr1:26593503 T/C 3.79E-6 287 25.62 29.87 14.38 KM Plot
KIRP rs3923714 chr16:89575608 T/A 0.000162 284 25.62 26.6 15.15 KM Plot
KIRP rs4048484 chr1:181723447 G/A 0.000115 282 20.27 29.82 23.97 KM Plot
KIRP rs407435 chr12:45331540 T/G 0.000102 289 20.27 28.17 24.67 KM Plot
KIRP rs41266839 chr6:26409890 G/C 1.5E-8 287 25.53 29.77 9.77 KM Plot
KIRP rs41280382 chr10:74894796 A/G 9.99E-15 288 26.37 22.8 5.6 KM Plot